Basic Information
Locus ID:
Chr12G027990
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the protein kinase superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 47207789 | 47208874 | - | Chr12G027990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 27 | 301 | 7.4E-56 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 18 | 317 | 5.53E-73 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 7 | 106 | 8.2E-17 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 120 | 325 | 2.1E-53 | - |
| SMART | SM00220 | serkin_6 | 27 | 301 | 3.1E-73 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 27 | 301 | 41.45998 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 33 | 56 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 153 | 165 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20930.1 | cyclin-dependent kinase B2;2. Cyclin-dependent kinase, expressed in flowers and suspension cell culture, expression peaks during M phase in synchronized cultures. Required for proper organization of the shoot apical meristem and for hormone signaling. Expressed in the shoot apical meristem. Involved in regulation of the G2/M transition of the mitotic cell cycle. | 0 |
| RefSeq | XP_025791574.1 | putative cyclin-dependent kinase F-2 [Panicum hallii] | 0 |
| Q8LG64 | Cyclin-dependent kinase B2-2 OS=Arabidopsis thaliana OX=3702 GN=CDKB2-2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2S3IJQ0 | Protein kinase domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_9G150200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology