Basic Information
Locus ID:
Chr12G027490
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 46317291 | 46322619 | + | Chr12G027490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 1 | 309 | 1.60898E-177 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 1 | 257 | 3.5E-114 | IPR013765 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 257 | 309 | 2.75E-16 | IPR023400 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 4 | 256 | 2.85E-51 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 22 | 316 | 3.3E-100 | IPR027417 |
| SMART | SM00382 | AAA_5 | 44 | 215 | 1.5E-6 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 1 | 309 | 6.7E-137 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 23 | 181 | 29.00738 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 186 | 261 | 27.387987 | IPR020587 |
| PRINTS | PR00142 | RecA protein signature | 286 | 303 | 4.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 152 | 181 | 4.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 197 | 225 | 4.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 80 | 109 | 4.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 114 | 143 | 4.7E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 232 | 261 | 4.7E-75 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 1 | 318 | 42.225246 | IPR013765 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79050.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_020407160.1 | protein recA isoform X2 [Zea mays] | 0 |
| Q39199 | DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1 | 0 | |
| TrEMBL | A0A0Q3J857 | DNA repair protein recA homolog 1, chloroplastic OS=Brachypodium distachyon OX=15368 GN=100841100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology