Basic Information
Locus ID:
Chr12G027060
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 45661766 | 45681064 | + | Chr12G027060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 152 | 204 | 5.73201E-27 | - |
| Pfam | PF00412 | LIM domain | 152 | 206 | 4.0E-11 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 301 | 513 | 5.3E-100 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 178 | 233 | 2.47E-10 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 146 | 177 | 3.06E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 145 | 226 | 4.9E-17 | - |
| SMART | SM00132 | lim_4 | 151 | 203 | 3.3E-14 | IPR001781 |
| SMART | SM00726 | uim | 91 | 110 | 0.045 | IPR003903 |
| SMART | SM00726 | uim | 41 | 60 | 39.0 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 150 | 210 | 12.701799 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 91 | 110 | 8.630105 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 152 | 186 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 460 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 464 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_022678914.1 | protein DA1-related 1 isoform X2 [Setaria italica] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A4U6SVH7 | LIM zinc-binding domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_9G162700v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology