Basic Information
Locus ID:
Chr12G027030
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 45648527 | 45649979 | + | Chr12G027030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 132 | 163 | 1.68E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 5 | 85 | 3.06E-7 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 165 | 282 | 1.7E-6 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 110 | 164 | 2.5E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 86 | 5.5E-12 | IPR013083 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 2 | 194 | 21.915756 | IPR044066 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34370.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039783361.1 | probable E3 ubiquitin-protein ligase ARI1 [Panicum virgatum] | 0 |
| Q949V6 | Probable E3 ubiquitin-protein ligase ARI1 OS=Arabidopsis thaliana OX=3702 GN=ARI1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9WCL1 | RBR-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_05597 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Chr12G027030.