Basic Information
Locus ID:
Chr12G025960
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 44119288 | 44122729 | + | Chr12G025960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 33 | 240 | 7.4E-75 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 141 | 230 | 1.23E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 139 | 243 | 7.1E-42 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 143 | 231 | 27.556767 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 99 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22670.1 | indoleacetic acid-induced protein 8. IAA8 (IAA8) gene is auxin inducible. | 0 |
| RefSeq | NP_001130483.1 | IAA17-auxin-responsive Aux/IAA family member [Zea mays] | 0 |
| Q75GB1 | Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A811RS12 | Auxin-responsive protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS55795 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology