Basic Information
Locus ID:
Chr12G023510
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 41066292 | 41067818 | - | Chr12G023510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 93 | 180 | 1.24625E-25 | - |
| Pfam | PF00855 | PWWP domain | 93 | 178 | 5.6E-14 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 91 | 207 | 1.32E-21 | - |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 426 | 466 | 7.9E-5 | IPR035979 |
| Gene3D | G3DSA:2.30.30.140 | - | 83 | 187 | 5.9E-21 | - |
| SMART | SM00293 | PWWP_4 | 93 | 155 | 6.1E-4 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 95 | 157 | 12.893939 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 311 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 486 | 508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09670.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_025809866.1 | uncharacterized protein LOC112887813 [Panicum hallii] | 0 |
| Q9SF36 | PWWP domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=PDP2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9U343 | PWWP domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_34186 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology