Basic Information
Locus ID:
Chr12G023340
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 40880097 | 40882090 | + | Chr12G023340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02242 | cupin_11S_legumin_N | 32 | 202 | 1.6314E-56 | - |
| CDD | cd02243 | cupin_11S_legumin_C | 229 | 383 | 7.59855E-76 | - |
| Pfam | PF00190 | Cupin | 37 | 185 | 6.2E-25 | IPR006045 |
| Pfam | PF00190 | Cupin | 227 | 369 | 1.0E-23 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 28 | 375 | 2.46E-48 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 226 | 386 | 5.0E-49 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 37 | 208 | 3.5E-29 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 31 | 188 | 1.3E-29 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 226 | 370 | 2.6E-18 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 307 | 322 | 3.3E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 242 | 262 | 3.3E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 289 | 305 | 3.3E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 347 | 364 | 3.3E-13 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 325 | 343 | 3.3E-13 | IPR006044 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_039798952.1 | 12S seed storage globulin 1-like [Panicum virgatum] | 0 |
| P07730 | Glutelin type-A 2 OS=Oryza sativa subsp. japonica OX=39947 GN=GLUA2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9U4X8 | Cupin type-1 domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_34306 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology