Basic Information
Locus ID:
Chr12G022010
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Jacalin-like lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 39875156 | 39876671 | - | Chr12G022010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 26 | 156 | 1.57278E-47 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 26 | 157 | 2.5E-27 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 15 | 157 | 4.97E-42 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 6 | 156 | 1.8E-53 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 26 | 157 | 5.1E-33 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 15 | 157 | 46.593807 | IPR001229 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 220 | - | - |
| Coils | Coil | Coil | 181 | 208 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73040.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_004961357.1 | jacalin-related lectin 19 isoform X2 [Setaria italica] | 0 |
| Q9SSM3 | Jacalin-related lectin 19 OS=Arabidopsis thaliana OX=3702 GN=JAL19 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9U9M3 | Jacalin-type lectin domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_36640 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology