Basic Information
Locus ID:
Chr12G021870
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
PA domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 39728469 | 39732944 | - | Chr12G021870 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 246 | 288 | 1.01389E-21 | - |
| CDD | cd02123 | PA_C_RZF_like | 27 | 175 | 5.02656E-50 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 245 | 288 | 1.4E-11 | IPR001841 |
| Pfam | PF02225 | PA domain | 68 | 154 | 3.9E-8 | IPR003137 |
| SUPERFAMILY | SSF57850 | RING/U-box | 226 | 298 | 3.53E-19 | - |
| SUPERFAMILY | SSF52025 | PA domain | 93 | 155 | 2.49E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 211 | 294 | 2.6E-19 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 38 | 167 | 7.2E-26 | - |
| SMART | SM00184 | ring_2 | 246 | 287 | 2.8E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 246 | 288 | 12.149959 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 347 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 461 | 482 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_015632382.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 isoform X1 [Oryza sativa Japonica Group] | 0 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9U0L6 | RING-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_40283 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology