Basic Information
Locus ID:
Chr12G020890
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 38627755 | 38633381 | + | Chr12G020890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 871 | 906 | 0.05 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 960 | 990 | 0.09 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 785 | 1095 | 1.69E-48 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 317 | 583 | 2.42E-11 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 319 | 587 | 2.5E-14 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 758 | 1098 | 2.4E-120 | IPR015943 |
| SMART | SM00320 | WD40_4 | 909 | 948 | 0.0061 | IPR001680 |
| SMART | SM00320 | WD40_4 | 866 | 906 | 1.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 824 | 863 | 0.053 | IPR001680 |
| SMART | SM00320 | WD40_4 | 769 | 813 | 7.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 952 | 990 | 9.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1001 | 1040 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1059 | 1096 | 39.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 848 | 872 | 8.770704 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 959 | 999 | 11.44416 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 959 | 992 | 9.493783 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 873 | 915 | 10.207686 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 850 | 864 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 977 | 991 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 850 | 864 | 9.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 977 | 991 | 9.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 893 | 907 | 9.4E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 397 | 421 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 179 | - | - |
| Coils | Coil | Coil | 620 | 640 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46340.1 | SPA (suppressor of phyA-105) protein family. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA1 is a PHYA signaling intermediate, putative regulator of PHYA signaling pathway. Light responsive repressor of photomorphogenesis. Involved in regulating circadian rhythms and flowering time in plants. Under constant light, the abundance of SPA1 protein exhibited circadian regulation, whereas under constant darkness, SPA1 protein levels remained unchanged. In addition, the spa1-3 mutation slightly shortened circadian period of CCA1, TOC1/PRR1 and SPA1 transcript accumulation under constant light. | 0 |
| RefSeq | XP_025809436.1 | protein SUPPRESSOR OF PHYA-105 1-like [Panicum hallii] | 0 |
| Q9SYX2 | Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana OX=3702 GN=SPA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9U9E3 | Protein SPA1-RELATED 2 OS=Eragrostis curvula OX=38414 GN=EJB05_36468 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology