Basic Information
Locus ID:
Chr12G020540
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 38384628 | 38388435 | + | Chr12G020540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 485 | 618 | 6.03721E-21 | - |
| Pfam | PF17862 | AAA+ lid domain | 640 | 675 | 2.9E-9 | IPR041569 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 487 | 617 | 2.0E-36 | IPR003959 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 113 | 316 | 2.95E-5 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 446 | 694 | 9.14E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 39 | 294 | 7.8E-6 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 445 | 733 | 5.1E-91 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 619 | 726 | 5.1E-91 | - |
| SMART | SM00382 | AAA_5 | 483 | 620 | 6.9E-19 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 590 | 609 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 404 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52882.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_004961073.1 | putative cell division cycle ATPase [Setaria italica] | 0 |
| Q9P7J5 | Uncharacterized AAA domain-containing protein C24B10.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC24B10.10c PE=3 SV=1 | 0 | |
| TrEMBL | A0A3L6T698 | Putative cell division cycle ATPase OS=Panicum miliaceum OX=4540 GN=C2845_PM05G27820 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology