Basic Information
Locus ID:
Chr12G019650
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 37607437 | 37607963 | - | Chr12G019650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 106 | 149 | 3.99945E-16 | - |
| Pfam | PF13639 | Ring finger domain | 106 | 149 | 4.0E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 100 | 155 | 4.37E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 103 | 152 | 9.0E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 107 | 148 | 9.5E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 107 | 149 | 12.607302 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 24 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G03550.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_052163204.1 | RING-H2 finger protein ATL32-like [Oryza glaberrima] | 0 |
| Q9SRQ8 | RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6G1D5F4 | RING-type E3 ubiquitin transferase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_020418 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4645 |
| Poaceae | Echinochloa crus-galli | 2 | BH01.4054, CH01.4319 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3AG0247630, gene-QOZ80_7AG0581660 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0112830.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_018681, gene-QYE76_038791, gene-QYE76_068013 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g02260.1 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr12G019650 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G235300 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G109000.1.cds1, TraesCS2B02G126700.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb016280_P001, Zm00001eb111410_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-103, nbis-gene-1626 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1237, Zma_g7070 |