Basic Information
Locus ID:
Chr12G019220
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 37145997 | 37146527 | - | Chr12G019220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 26 | 115 | 9.9E-16 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 9 | 111 | 6.15E-20 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 19 | 107 | 2.9E-21 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 26 | 128 | 13.828012 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 32 | 59 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17290.1 | Calcium-dependent protein kinase family protein. Encodes calcium dependent protein kinase 6 (CPK6), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK6 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK3 is also a member of the Arabidopsis CDPK family. | 0 |
| RefSeq | XP_004954529.2 | calcium-dependent protein kinase 6 [Setaria italica] | 0 |
| Q6K968 | Calcium-dependent protein kinase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1E5V9V8 | Calcium-dependent protein kinase 4 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0017191 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Chr12G019220.