Basic Information
Locus ID:
Chr12G017260
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 33514440 | 33515633 | + | Chr12G017260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 68 | 6.9E-6 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 124 | 183 | 8.2E-9 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 39 | 369 | 2.15E-45 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 191 | 284 | 3.2E-16 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 30 | 190 | 2.4E-33 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 287 | 370 | 1.1E-8 | IPR032675 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 148 | 171 | 7.21141 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 149 | 162 | 4.6E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 238 | 251 | 4.6E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G03440.1 | Leucine-rich repeat (LRR) family protein. | 0 |
| RefSeq | XP_004962119.1 | LRR receptor-like serine/threonine-protein kinase ERECTA [Setaria italica] | 0 |
| TrEMBL | K3Z6R5 | LRRNT_2 domain-containing protein OS=Setaria italica OX=4555 GN=101756593 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology