halophFGD

Basic Information

Locus ID: Chr12G016620

Species & Taxonomic ID: Sporobolus alterniflorus & 29706

Genome Assembly: GWHCBIM00000000

Description: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
GWHCBIM00000012	31900678	31905426	-	Chr12G016620

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
0.00	0.00 Da	0.00	0.00	0.00

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd12362	RRM3_CELF1-6	362	434	9.37109E-44	-
CDD	cd12361	RRM1_2_CELF1-6_like	114	190	3.87476E-34	-
CDD	cd12361	RRM1_2_CELF1-6_like	26	102	1.02576E-32	-
Pfam	PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	362	432	1.3E-17	IPR000504
Pfam	PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	27	89	3.4E-10	IPR000504
Pfam	PF00076	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	115	183	6.2E-17	IPR000504
SUPERFAMILY	SSF54928	RNA-binding domain, RBD	113	440	5.98E-43	IPR035979
SUPERFAMILY	SSF54928	RNA-binding domain, RBD	10	108	2.28E-17	IPR035979
Gene3D	G3DSA:3.30.70.330	-	325	437	1.6E-28	IPR012677
Gene3D	G3DSA:3.30.70.330	-	110	204	1.6E-24	IPR012677
Gene3D	G3DSA:3.30.70.330	-	18	109	2.1E-19	IPR012677
SMART	SM00360	rrm1_1	114	190	3.8E-17	IPR000504
SMART	SM00360	rrm1_1	26	102	3.1E-14	IPR000504
SMART	SM00360	rrm1_1	361	434	1.7E-23	IPR000504
ProSiteProfiles	PS50102	Eukaryotic RNA Recognition Motif (RRM) profile.	25	106	12.202171	IPR000504
ProSiteProfiles	PS50102	Eukaryotic RNA Recognition Motif (RRM) profile.	360	438	17.387012	IPR000504
ProSiteProfiles	PS50102	Eukaryotic RNA Recognition Motif (RRM) profile.	113	194	16.022581	IPR000504
PRINTS	PR00961	Paraneoplastic encephalomyelitis antigen family signature	133	145	5.4E-8	IPR002343
PRINTS	PR00961	Paraneoplastic encephalomyelitis antigen family signature	118	133	5.4E-8	IPR002343
PRINTS	PR00961	Paraneoplastic encephalomyelitis antigen family signature	25	40	5.4E-8	IPR002343
PRINTS	PR00961	Paraneoplastic encephalomyelitis antigen family signature	175	192	5.4E-8	IPR002343
MobiDBLite	mobidb-lite	consensus disorder prediction	1	24	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	334	354	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	334	356	-	-

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0003723 (RNA binding)

Cellular Component:

GO:1990904 (ribonucleoprotein complex)

KEGG Pathway

KO Term:

K13207 (CUG-BP- and ETR3-like factor)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G03110.1	RNA-binding protein-defense related 1. Encodes a putative RNA-binding protein that is located in the cytoplasm and is involved in the hypersensitive response and positively regulates salicylic acid-mediated immunity.
RefSeq	XP_004962252.1	RNA-binding protein BRN1 [Setaria italica]
Swiss-Prot	Q8LFS6	RNA-binding protein BRN1 OS=Arabidopsis thaliana OX=3702 GN=BRN1 PE=2 SV=1
TrEMBL	A0A5J9U6D6	RNA-binding protein BRN1 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_35258 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg16095, jg35244, jg37911, jg8847
Aizoaceae	Mesembryanthemum crystallinum	1	gene_5143
Amaranthaceae	Atriplex hortensis	2	Ah029689, Ah032912
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg35852, Sbi_jg914
Amaranthaceae	Salicornia europaea	1	Seu_jg3844
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00013667
Amaranthaceae	Suaeda glauca	2	Sgl71883, Sgl75445
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000007103, gene:ENSEOMG00000034662 ... gene:ENSEOMG00000042790
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.7AG0014650, CQ.Regalona.r1.7BG0016620
Anacardiaceae	Pistacia vera	1	pistato.v30010120
Apiaceae	Apium graveolens	3	Ag11G03088, Ag2G02439, Ag6G02257
Arecaceae	Cocos nucifera	2	COCNU_04G008770, COCNU_16G002830
Arecaceae	Phoenix dactylifera	2	gene-LOC103711713, gene-LOC103722798
Asparagaceae	Asparagus officinalis	1	AsparagusV1_07.1378.V1.1
Asteraceae	Flaveria trinervia	2	Ftri12G33737, Ftri15G26567
Brassicaceae	Arabidopsis thaliana	2	AT1G03457.2, AT4G03110.1
Brassicaceae	Eutrema salsugineum	3	Thhalv10007707m.g.v1.0, Thhalv10028663m.g.v1.0 ... Thhalv10028982m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp1g02420.v2.2, Sp6g03140.v2.2
Brassicaceae	Brassica nigra	3	BniB05g055600.2N, BniB06g047370.2N, BniB08g045830.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq06G1628
Casuarinaceae	Casuarina glauca	1	Cgl06G1689
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno10g05220, gene.Cymno14g10470
Dunaliellaceae	Dunaliella salina	2	Dusal.0160s00017.v1.0, Dusal.0945s00008.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate02g02070
Malvaceae	Hibiscus hamabo Siebold & Zucc.	3	nbisL1-mrna-6282, nbisL1-mrna-6283, nbisL1-mrna-9648
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG04.258
Plantaginaceae	Plantago ovata	2	Pov_00008195, Pov_00024818
Plumbaginaceae	Limonium bicolor	3	Lb4G23685, Lb4G23891, Lb5G29048
Poaceae	Echinochloa crus-galli	7	AH02.4463, AH05.2693, BH02.4512, BH02.4513, BH05.2788 ... CH02.4562, CH05.2875
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_1AG0046060, gene-QOZ80_1BG0096030 ... gene-QOZ80_5AG0375590, gene-QOZ80_5BG0422890
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0059810.1, HORVU.MOREX.r3.3HG0316870.1
Poaceae	Lolium multiflorum	4	gene-QYE76_013784, gene-QYE76_017622, gene-QYE76_057815 ... gene-QYE76_057850
Poaceae	Oryza coarctata	5	Oco01G029560, Oco02G030740, Oco09G008040, Oco10G008260 ... Oco14G015910
Poaceae	Oryza sativa	5	LOC_Os01g71200.1, LOC_Os05g30980.1, LOC_Os05g34560.1 ... LOC_Os07g46820.1, LOC_Os11g32820.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G398600, gene-BS78_09G123300
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0505285, Pt_Chr0600757
Poaceae	Sporobolus alterniflorus	10	Chr01G021720, Chr02G001380, Chr03G023470, Chr05G033170 ... Chr05G033280, Chr07G008270, Chr08G018460, Chr12G016620, Chr18G007520, Chr22G009930
Poaceae	Thinopyrum elongatum	3	Tel1E01G394000, Tel3E01G760400, Tel3E01G760500
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG035570, gene_TRIDC1BG040770 ... gene_TRIDC3AG066720, gene_TRIDC3BG075560
Poaceae	Triticum aestivum	6	TraesCS1A02G236000.2, TraesCS1B02G247800.1 ... TraesCS1D02G236300.1, TraesCS3A02G473900.2, TraesCS3B02G517100.1, TraesCSU02G040800.1
Poaceae	Zea mays	3	Zm00001eb285190_P001, Zm00001eb346250_P002 ... Zm00001eb363310_P002
Poaceae	Zoysia japonica	4	nbis-gene-10869, nbis-gene-28198, nbis-gene-38799 ... nbis-gene-48480
Poaceae	Zoysia macrostachya	4	Zma_g11910, Zma_g26740, Zma_g28109, Zma_g9351
Portulacaceae	Portulaca oleracea	4	evm.TU.LG01.178, evm.TU.LG03.769, evm.TU.LG04.574 ... evm.TU.LG12.957
Posidoniaceae	Posidonia oceanica	1	gene.Posoc06g20500
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_5_RagTag.918, evm.TU.Scaffold_9_RagTag.863
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-11426, nbisL1-mrna-21357
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-19933, nbisL1-mrna-7731
Rhizophoraceae	Ceriops zippeliana	2	nbisL1-mrna-11537, nbisL1-mrna-18441
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000003l.552, evm.TU.utg000006l.257
Rhizophoraceae	Kandelia obovata	2	Maker00009637, Maker00013057
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-10038, nbisL1-mrna-1536
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-5190, nbisL1-mrna-7533
Salicaceae	Populus euphratica	3	populus_peu19066, populus_peu27195, populus_peu37453
Solanaceae	Lycium barbarum	2	gene-LOC132608316, gene-LOC132609310
Solanaceae	Solanum chilense	1	SOLCI007330800
Solanaceae	Solanum pennellii	1	gene-LOC107031400
Tamaricaceae	Reaumuria soongarica	1	gene_10702
Tamaricaceae	Tamarix chinensis	1	TC08G0630
Zosteraceae	Zostera marina	1	Zosma01g27260.v3.1