Basic Information
Locus ID:
Chr12G016380
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 31260045 | 31261612 | + | Chr12G016380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 195 | 239 | 3.2E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 188 | 270 | 4.84E-14 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 181 | 274 | 2.2E-10 | - |
| SMART | SM00256 | fbox_2 | 197 | 238 | 1.2E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 191 | 238 | 9.735919 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 401 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_002467378.1 | uncharacterized protein LOC8083603 [Sorghum bicolor] | 0 |
| TrEMBL | A0A5J9U6H0 | F-box domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_35332 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH01.2957, CH01.3154 |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_1AG0034520, gene-QOZ80_5AG0375060 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G194300 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr01G021480, Chr02G008650, Chr05G024830, Chr08G017020 ... |
| Poaceae | Zea mays | 2 | Zm00001eb224500_P001, Zm00001eb224510_P001 |
| Poaceae | Zoysia japonica | 5 | nbis-gene-23678, nbis-gene-23679, nbis-gene-23680 ... |
| Poaceae | Zoysia macrostachya | 2 | Zma_g28150, Zma_g28151 |