Basic Information
Locus ID:
Chr12G015370
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
NUP50 (Nucleoporin 50 kDa)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 27194188 | 27198083 | - | Chr12G015370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13169 | RanBD_NUP50_plant | 319 | 436 | 1.35209E-58 | - |
| Pfam | PF08911 | NUP50 (Nucleoporin 50 kDa) | 12 | 71 | 3.1E-13 | IPR015007 |
| Pfam | PF00638 | RanBP1 domain | 317 | 433 | 4.3E-16 | IPR000156 |
| SUPERFAMILY | SSF50729 | PH domain-like | 311 | 435 | 2.87E-28 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 253 | 433 | 6.9E-35 | IPR011993 |
| SMART | SM00160 | ranbd_3 | 307 | 432 | 9.4E-12 | IPR000156 |
| ProSiteProfiles | PS50196 | Ran binding domain type 1 profile. | 305 | 438 | 18.246458 | IPR000156 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 224 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 452 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 114 | - | - |
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15970.1 | NUP50 (Nucleoporin 50 kDa) protein. | 0 |
| RefSeq | XP_025807798.1 | nuclear pore complex protein NUP50A-like [Panicum hallii] | 0 |
| Q9LW88 | Nuclear pore complex protein NUP50B OS=Arabidopsis thaliana OX=3702 GN=NUP50B PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7EF54 | RanBD1 domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G310300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18181 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_26154 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010675 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g220460 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg11468, Sbi_jg46401 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20724 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005263 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl55889, Sgl61079 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019614, gene:ENSEOMG00000038857 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0010820, CQ.Regalona.r1.9AG0013810 |
| Apiaceae | Apium graveolens | 3 | Ag5G00834, Ag6G01455, Ag6G01456 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G000490, COCNU_03G016050 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103704584, gene-LOC103709734, gene-LOC120111515 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2021.V1.1, AsparagusV1_06.1159.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G31180, Ftri4G19743 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G52380.1, AT3G15970.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10011504m.g.v1.0, Thhalv10020773m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g38990.v2.2, Sp3g14320.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g057400.2N, BniB06g028360.2N, BniB07g028590.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0227 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0236 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno10g08560, gene.Cymno14g07250 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0012s00025.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g15230 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 3 | nbisL1-mrna-3211, nbisL1-mrna-4532, nbisL1-mrna-7407 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00015428, Pov_00024989 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G23405 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.322, AH05.2851, BH03.402, BH05.2900, CH03.470 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_5AG0376770 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0061740.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_012881, gene-QYE76_012938 |
| Poaceae | Oryza coarctata | 2 | Oco09G007220, Oco10G007480 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g28190.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G317100 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr12G015370, Chr18G006070, Chr22G010730 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G379000, Tel7E01G753600 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG033810, gene_TRIDC1BG039190 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS1A02G224800.1, TraesCS1B02G238000.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb155830_P002, Zm00001eb360880_P001 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g26668, Zma_g27967 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1187, evm.TU.LG11.543 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g15760 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.1254 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-27856, nbisL1-mrna-6972 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10714, nbisL1-mrna-14797 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16988, nbisL1-mrna-7904 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000023l.76, add.evm.TU.utg000033l.186 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00014756, Maker00017488 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-23404 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-18020, nbisL1-mrna-21261 |
| Salicaceae | Populus euphratica | 3 | populus_peu02778, populus_peu33695, populus_peu33723 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132598472, gene-LOC132633345 |
| Solanaceae | Solanum chilense | 2 | SOLCI001215800, SOLCI001859600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014818, gene-LOC107021139 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.19081_chr07_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC08G2086, TC10G1951 |
| Zosteraceae | Zostera marina | 1 | Zosma01g24890.v3.1 |