Basic Information
Locus ID:
Chr12G013730
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 16821271 | 16827158 | - | Chr12G013730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 416 | 684 | 9.76565E-89 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 29 | 69 | 1.5E-8 | IPR013210 |
| Pfam | PF13516 | Leucine Rich repeat | 120 | 134 | 1.8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 144 | 204 | 5.4E-12 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 412 | 681 | 1.6E-38 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 28 | 241 | 8.5E-34 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 392 | 681 | 9.57E-69 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 28 | 254 | 1.2E-43 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 373 | 487 | 5.5E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 489 | 709 | 5.8E-56 | - |
| SMART | SM00369 | LRR_typ_2 | 143 | 166 | 16.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 191 | 213 | 56.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 167 | 190 | 8.9 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 94 | 120 | 320.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 410 | 684 | 34.901806 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 193 | 215 | 7.557941 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 416 | 439 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_025795857.1 | protein STRUBBELIG-RECEPTOR FAMILY 6-like [Panicum hallii] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2T7CGY1 | Protein kinase domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G588500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology