Basic Information
Locus ID:
Chr12G011530
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
cysteine synthase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 12853622 | 12857161 | + | Chr12G011530 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00291 | Pyridoxal-phosphate dependent enzyme | 46 | 227 | 5.4E-17 | IPR001926 |
| SUPERFAMILY | SSF53686 | Tryptophan synthase beta subunit-like PLP-dependent enzymes | 46 | 258 | 2.61E-27 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 38 | 123 | 1.6E-13 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 124 | 214 | 9.3E-14 | IPR036052 |
| Gene3D | G3DSA:3.40.50.1100 | - | 215 | 262 | 9.4E-10 | IPR036052 |
KEGG Pathway
Pathway:
ko00270 (Cysteine and methionine metabolism)
map00270 (Cysteine and methionine metabolism)
ko00920 (Sulfur metabolism)
map00920 (Sulfur metabolism)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01120 (Microbial metabolism in diverse environments)
map01120 (Microbial metabolism in diverse environments)
ko01200 (Carbon metabolism)
map01200 (Carbon metabolism)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55880.1 | Pyridoxal-5'-phosphate-dependent enzyme family protein. | 0 |
| RefSeq | XP_034574084.1 | cysteine synthase [Setaria viridis] | 0 |
| Q7SHQ1 | Cysteine synthase 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=cys-12 PE=3 SV=1 | 0 | |
| TrEMBL | A0A4U6TAN7 | PALP domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_9G494000v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg10742 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_20480, gene_9065 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah037782 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g202660 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg43641 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18267 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020357 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl78051, Sgl80556 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000017186 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0000690, CQ.Regalona.r1.9BG0021690 |
| Apiaceae | Apium graveolens | 1 | Ag4G01784 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G003270, COCNU_06G003280 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103697887, gene-LOC103716030 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.396.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G25136, Ftri5G15556 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G18310.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10003730m.g.v1.0, Thhalv10020051m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g16450.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g046220.2N, BniB08g051880.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2805 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2959 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g04140 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g17100 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-8660, nbisL1-mrna-8661 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.808 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00028132 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G19892 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0393090.1.CDS1 |
| Poaceae | Oryza coarctata | 2 | Oco05G007690, Oco06G007990 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g13720.1, LOC_Os09g01700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G423000 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G027920, Chr01G029010, Chr12G010490, Chr12G011530 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G397100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG010160, gene_TRIDC4BG040450 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G072900.1.cds1, TraesCS4B02G229000.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb399070_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-3925, nbis-gene-53873 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g26580, Zma_g4055 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.1694 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g04600 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.757 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-1202 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4178 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6435 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000019l.316 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012647 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-5219 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-13194 |
| Salicaceae | Populus euphratica | 1 | populus_peu29651 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645188 |
| Solanaceae | Solanum chilense | 1 | SOLCI002883700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008296 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_132 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0571 |
| Zosteraceae | Zostera marina | 1 | Zosma05g13760.v3.1 |