Basic Information
Locus ID:
Chr12G010780
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Cation efflux family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 11419521 | 11424025 | + | Chr12G010780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16916 | Dimerisation domain of Zinc Transporter | 305 | 380 | 1.7E-12 | IPR027470 |
| Pfam | PF01545 | Cation efflux family | 108 | 300 | 2.1E-26 | IPR002524 |
| SUPERFAMILY | SSF161111 | Cation efflux protein transmembrane domain-like | 99 | 301 | 4.84E-39 | IPR027469 |
| SUPERFAMILY | SSF160240 | Cation efflux protein cytoplasmic domain-like | 303 | 380 | 1.01E-15 | IPR036837 |
| Gene3D | G3DSA:1.20.1510.10 | Cation efflux protein transmembrane domain | 105 | 299 | 2.9E-37 | IPR027469 |
| Gene3D | G3DSA:3.30.70.1350 | Cation efflux protein, cytoplasmic domain | 307 | 397 | 2.2E-17 | IPR036837 |
| TIGRFAM | TIGR01297 | CDF: cation diffusion facilitator family transporter | 105 | 380 | 1.6E-33 | IPR002524 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58060.1 | Cation efflux family protein. | 0 |
| RefSeq | XP_044982298.1 | metal tolerance protein 4 [Hordeum vulgare subsp. vulgare] | 0 |
| Q10PP8 | Metal tolerance protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=MTP4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9WKB9 | ZT_dimer domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_07419 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology