Basic Information
Locus ID:
Chr12G009890
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Short Name:
NTMC2T4.2
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 10095196 | 10098188 | + | Chr12G009890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 265 | 353 | 2.17499E-28 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 68 | 247 | 2.0E-17 | IPR039010 |
| Pfam | PF00168 | C2 domain | 263 | 358 | 1.3E-22 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 261 | 391 | 1.14E-29 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 247 | 420 | 2.0E-31 | IPR035892 |
| SMART | SM00239 | C2_3c | 264 | 362 | 9.4E-21 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 66 | 248 | 24.058607 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 246 | 365 | 21.571363 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 327 | 335 | 2.7E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 305 | 318 | 2.7E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 280 | 292 | 2.7E-5 | IPR000008 |
| Coils | Coil | Coil | 398 | 418 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_039786919.1 | calcium-dependent lipid-binding protein-like [Panicum virgatum] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0P1Y6 | Synaptotagmin-4-like OS=Panicum virgatum OX=38727 GN=PVAP13_9KG528100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology