Basic Information
Locus ID:
Chr12G009710
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 9866621 | 9881943 | + | Chr12G009710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 449 | 485 | 0.0027 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 912 | 945 | 0.0033 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 831 | 1090 | 4.07E-35 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 339 | 661 | 3.66E-39 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 567 | 681 | 4.2E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 830 | 1111 | 2.1E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 326 | 566 | 1.2E-29 | IPR015943 |
| SMART | SM00667 | Lish | 4 | 36 | 5.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 863 | 903 | 1.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 579 | 619 | 17.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 996 | 1037 | 2.9 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.7E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 489 | 530 | 0.36 | IPR001680 |
| SMART | SM00320 | WD40_4 | 533 | 576 | 31.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 823 | 860 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 339 | 378 | 10.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 906 | 945 | 1.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 445 | 486 | 5.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 399 | 439 | 19.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 913 | 945 | 12.212779 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 452 | 495 | 9.205141 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 913 | 945 | 10.179234 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.212169 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.137639 | IPR006595 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 473 | 487 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1091 | 1127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1102 | 1127 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_004984974.1 | protein TPR3 isoform X2 [Setaria italica] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | K4A534 | TOPLESS OS=Setaria italica OX=4555 GN=101786587 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology