Basic Information
Locus ID:
Chr12G008960
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Variant SH3 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 8906056 | 8911274 | - | Chr12G008960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 333 | 381 | 7.4E-12 | IPR001452 |
| SUPERFAMILY | SSF50044 | SH3-domain | 331 | 387 | 6.04E-16 | IPR036028 |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 62 | 273 | 6.63E-21 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 318 | 394 | 4.4E-17 | - |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 60 | 298 | 1.3E-12 | IPR027267 |
| SMART | SM00326 | SH3_2 | 329 | 384 | 1.0E-13 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 326 | 385 | 20.287476 | IPR001452 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 212 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 312 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 212 | - | - |
| Coils | Coil | Coil | 208 | 228 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31440.1 | SH3 domain-containing protein. | 0 |
| RefSeq | XP_034576868.1 | SH3 domain-containing protein 2-like [Setaria viridis] | 0 |
| Q9C865 | SH3 domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=SH3P1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4U6T9D8 | SH3 domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_9G461900v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology