Basic Information
Locus ID:
Chr12G008750
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Protein of unknown function (DUF1117)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 8592245 | 8593784 | - | Chr12G008750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 137 | 178 | 1.09299E-22 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 194 | 277 | 2.8E-27 | IPR010543 |
| Pfam | PF13639 | Ring finger domain | 136 | 178 | 2.5E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 9 | 38 | 9.8E-12 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 134 | 183 | 5.96E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 104 | 184 | 3.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 137 | 177 | 4.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 137 | 178 | 12.592549 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G59550.1 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_039786725.1 | E3 ubiquitin-protein ligase RDUF2-like [Panicum virgatum] | 0 |
| Q940T5 | E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0A9F367 | RING-type E3 ubiquitin transferase OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology