Basic Information
Locus ID:
Chr12G008570
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 8149665 | 8157607 | - | Chr12G008570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 298 | 340 | 1.97111E-25 | - |
| Pfam | PF04564 | U-box domain | 294 | 364 | 2.7E-19 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 502 | 540 | 3.0E-9 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 420 | 458 | 1.9E-9 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 392 | 665 | 6.14E-50 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 285 | 369 | 3.05E-29 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 577 | 705 | 8.1E-9 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 51 | 164 | 1.0E-7 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 376 | 576 | 9.6E-42 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 294 | 367 | 3.8E-30 | IPR013083 |
| SMART | SM00185 | arm_5 | 501 | 541 | 0.0012 | IPR000225 |
| SMART | SM00185 | arm_5 | 419 | 459 | 6.1E-6 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 297 | 360 | 1.4E-32 | IPR003613 |
| SMART | SM00185 | arm_5 | 377 | 417 | 42.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 583 | 623 | 310.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 460 | 500 | 7.4 | IPR000225 |
| SMART | SM00185 | arm_5 | 542 | 582 | 13.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 512 | 554 | 9.4324 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 293 | 367 | 44.522175 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 430 | 472 | 12.0924 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 553 | 595 | 9.1874 | IPR000225 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 692 | 717 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 692 | 708 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G46510.1 | plant U-box 13. Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. | 0 |
| RefSeq | XP_025793712.1 | protein spotted leaf 11-like [Panicum hallii] | 0 |
| A2ZLU6 | Protein spotted leaf 11 OS=Oryza sativa subsp. indica OX=39946 GN=SPL11 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3L6S9A7 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM02G30150 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology