Basic Information
Locus ID:
Chr12G007500
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 7098890 | 7101626 | + | Chr12G007500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 406 | 588 | 1.89883E-87 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 47 | 208 | 1.14497E-91 | - |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 45 | 214 | 5.8E-36 | IPR012001 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 241 | 354 | 4.5E-19 | IPR012000 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 451 | 576 | 3.4E-14 | IPR011766 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 406 | 600 | 3.22E-40 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 230 | 384 | 3.02E-31 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 44 | 223 | 1.56E-44 | IPR029061 |
| Gene3D | G3DSA:3.40.50.970 | - | 401 | 587 | 3.3E-55 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 41 | 217 | 8.4E-61 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 231 | 393 | 7.0E-41 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 39 | 600 | 3.1E-209 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54960.1 | pyruvate decarboxylase-2. pyruvate decarboxylase-2 | 0 |
| RefSeq | XP_039828800.1 | pyruvate decarboxylase 2 [Panicum virgatum] | 0 |
| A2XFI3 | Pyruvate decarboxylase 2 OS=Oryza sativa subsp. indica OX=39946 GN=PDC2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8T0MX14 | pyruvate decarboxylase OS=Panicum virgatum OX=38727 GN=PVAP13_9NG714000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology