Basic Information
Locus ID:
Chr12G005730
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
DWNN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 5124615 | 5126282 | - | Chr12G005730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 192 | 232 | 5.328E-9 | - |
| Pfam | PF13696 | Zinc knuckle | 136 | 156 | 3.4E-10 | IPR025829 |
| Pfam | PF08783 | DWNN domain | 25 | 50 | 1.4E-5 | IPR014891 |
| SUPERFAMILY | SSF57850 | RING/U-box | 184 | 255 | 2.51E-9 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 185 | 263 | 6.1E-11 | IPR013083 |
| Gene3D | G3DSA:4.10.60.10 | - | 135 | 184 | 2.6E-11 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 24 | 53 | 3.1E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 261 | 302 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 381 | 415 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 96 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 37 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.4 | - | 0 |
| RefSeq | XP_034570947.1 | E3 ubiquitin ligase PQT3-like [Setaria viridis] | 0 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WH06 | DWNN domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_06744 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology