Basic Information
Locus ID:
Chr12G005490
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
DWNN domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 4939229 | 4940556 | + | Chr12G005490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16620 | vRING-HC-C4C4_RBBP6 | 208 | 248 | 2.12464E-9 | - |
| Pfam | PF13696 | Zinc knuckle | 155 | 175 | 8.9E-10 | IPR025829 |
| Pfam | PF08783 | DWNN domain | 3 | 81 | 4.3E-16 | IPR014891 |
| SUPERFAMILY | SSF57850 | RING/U-box | 206 | 273 | 4.24E-8 | - |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 146 | 178 | 7.06E-5 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 153 | 203 | 8.0E-11 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 84 | 9.2E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 204 | 277 | 3.4E-10 | IPR013083 |
| SMART | SM01180 | DWNN_2 | 3 | 82 | 2.2E-30 | IPR014891 |
| ProSiteProfiles | PS51282 | DWNN domain profile. | 3 | 82 | 12.604776 | IPR014891 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 280 | 341 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 397 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 399 | 423 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 339 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47430.3 | DWNN domain, a CCHC-type zinc finger. | 0 |
| RefSeq | XP_039827501.1 | E3 ubiquitin ligase PQT3-like [Panicum virgatum] | 0 |
| B9DFV2 | E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WH06 | DWNN domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_06744 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology