Basic Information
Locus ID:
Chr12G004650
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 4137298 | 4149724 | + | Chr12G004650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 28 | 127 | 3.20782E-12 | - |
| CDD | cd00159 | RhoGAP | 188 | 327 | 3.12918E-32 | - |
| Pfam | PF00169 | PH domain | 27 | 131 | 1.2E-12 | IPR001849 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 617 | 697 | 3.3E-20 | IPR025757 |
| Pfam | PF00620 | RhoGAP domain | 188 | 332 | 1.4E-30 | IPR000198 |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 188 | 381 | 3.73E-33 | IPR008936 |
| SUPERFAMILY | SSF50729 | PH domain-like | 22 | 138 | 2.11E-18 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 17 | 133 | 9.7E-18 | IPR011993 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 158 | 381 | 2.4E-41 | IPR008936 |
| SMART | SM00233 | PH_update | 26 | 134 | 2.3E-16 | IPR001849 |
| SMART | SM00324 | RhoGAP_3 | 185 | 376 | 2.8E-24 | IPR000198 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 179 | 379 | 30.513508 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 25 | 132 | 15.7985 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 406 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 851 | 870 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 409 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 530 | 565 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 530 | 578 | - | - |
| Coils | Coil | Coil | 666 | 700 | - | - |
| Coils | Coil | Coil | 582 | 602 | - | - |
| Coils | Coil | Coil | 823 | 843 | - | - |
| Coils | Coil | Coil | 607 | 641 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_025794932.1 | rho GTPase-activating protein 7-like isoform X1 [Panicum hallii] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2T8I4T7 | Rho GTPase-activating protein 7-like OS=Panicum hallii OX=206008 GN=PAHAL_9G459800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology