Basic Information
Locus ID:
Chr12G003170
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
PPR repeat family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 2734786 | 2737647 | - | Chr12G003170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 237 | 285 | 4.7E-13 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 178 | 202 | 2.4E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 416 | 440 | 0.24 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 74 | 103 | 0.0052 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 340 | 387 | 7.1E-8 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 209 | 234 | 3.0E-5 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 128 | 204 | 8.0E-12 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 311 | 521 | 3.2E-41 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 205 | 306 | 2.0E-26 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 13 | 123 | 5.7E-9 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 344 | 377 | 2.7E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 378 | 412 | 5.8E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 178 | 202 | 2.9E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 240 | 274 | 9.5E-10 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 209 | 239 | 4.9E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 315 | 342 | 4.8E-4 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 238 | 272 | 13.17554 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 72 | 106 | 9.04313 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 176 | 210 | 10.446177 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 310 | 340 | 8.659485 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 341 | 375 | 10.818861 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15300.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_012698034.1 | pentatricopeptide repeat-containing protein At5g15300 [Setaria italica] | 0 |
| Q9LXF2 | Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E40 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9WJ64 | DYW_deaminase domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_07898 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40248 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17310 |
| Apiaceae | Apium graveolens | 1 | Ag9G00512 |
| Arecaceae | Cocos nucifera | 1 | COCNU_03G005640 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103698129, gene-LOC103705230 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_03.1676.V1.1, AsparagusV1_08.2249.V1.1 ... |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G29278 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G15300.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015396m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g28770.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g047570.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0301 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0247 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g03450 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10276 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.215 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00023553, Pov_00023554 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02185 |
| Poaceae | Echinochloa crus-galli | 4 | AH06.918, BH01.4781, BH06.950, CH01.5425 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_3AG0235190, gene-QOZ80_3BG0292930 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.4HG0403200.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_028919, gene-QYE76_070499 |
| Poaceae | Oryza coarctata | 4 | Oco05G003990, Oco06G004060, Oco11G005960, Oco12G006000 |
| Poaceae | Oryza sativa | 2 | LOC_Os03g07234.1, LOC_Os06g12510.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G467500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0400350 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr01G036280, Chr0G008330, Chr12G003170, Chr14G004460 ... |
| Poaceae | Thinopyrum elongatum | 2 | Tel4E01G478100, Tel7E01G348900 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4AG002620, gene_TRIDC4BG048960 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G019500.1.cds1, TraesCS4B02G284600.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb402420_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-2789, nbis-gene-51389 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1989, Zma_g29398 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g28170 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15155 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-733 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-248 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000011l.67 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007133 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21441 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17318 |
| Salicaceae | Populus euphratica | 1 | populus_peu00672 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623484 |
| Solanaceae | Solanum chilense | 1 | SOLCI007491700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011981 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7291 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G1296 |
| Zosteraceae | Zostera marina | 1 | Zosma01g04840.v3.1 |