Basic Information
Locus ID:
Chr12G002150
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 1889814 | 1891799 | - | Chr12G002150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 32 | 157 | 2.11347E-42 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 33 | 157 | 4.1E-34 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 35 | 157 | 4.13E-39 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 5 | 175 | 2.9E-38 | IPR016135 |
| SMART | SM00212 | ubc_7 | 3 | 164 | 4.7E-34 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 3 | 164 | 33.712624 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 89 | 105 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 182 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 190 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G63800.1 | ubiquitin-conjugating enzyme 5. | 0 |
| RefSeq | XP_025797799.1 | ubiquitin-conjugating enzyme E2 4-like [Panicum hallii] | 0 |
| P42749 | Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana OX=3702 GN=UBC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8T0N3M9 | UBC core domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9NG748200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology