Basic Information
Locus ID:
Chr12G002040
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
CHY zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 1799981 | 1802565 | + | Chr12G002040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 148 | 191 | 2.0E-7 | IPR001841 |
| Pfam | PF05495 | CHY zinc finger | 7 | 88 | 1.1E-17 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 196 | 254 | 9.0E-27 | IPR039512 |
| SUPERFAMILY | SSF57850 | RING/U-box | 147 | 193 | 1.32E-9 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 79 | 141 | 9.94E-16 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 4 | 77 | 1.44E-16 | IPR037274 |
| Gene3D | G3DSA:2.20.28.10 | - | 220 | 262 | 4.5E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 141 | 212 | 2.3E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 149 | 191 | 1.2E-6 | IPR001841 |
| SMART | SM00184 | ring_2 | 58 | 86 | 19.0 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 149 | 191 | 11.854899 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1 | 76 | 23.903198 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 78 | 148 | 30.315601 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_006649394.1 | E3 ubiquitin-protein ligase RZFP34-like [Oryza brachyantha] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0K8Q4 | CHY-type domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology