Basic Information
Locus ID:
Chr12G000330
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000012 | 333673 | 336548 | + | Chr12G000330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 559 | 598 | 1.39718E-17 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 557 | 603 | 9.8E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 558 | 604 | 7.34E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 547 | 609 | 3.1E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 559 | 598 | 10.527129 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 448 | 473 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 331 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 332 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 369 | 385 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 355 | 389 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_022685551.1 | uncharacterized protein LOC101779219 [Setaria italica] | 0 |
| Q0MW30 | E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus OX=10090 GN=Neurl1b PE=1 SV=1 | 0 | |
| TrEMBL | A0A0A9DTT5 | RING-type domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology