Basic Information
Locus ID:
Chr11G024820
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000011 | 52752090 | 52758782 | + | Chr11G024820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 448 | 503 | 2.3E-16 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 630 | 679 | 7.1E-16 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 688 | 742 | 1.95E-11 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 778 | 836 | 2.21E-8 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 939 | 1036 | 8.89E-8 | IPR016181 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 682 | 774 | 1.6E-13 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 780 | 841 | 5.4E-12 | IPR013083 |
| SMART | SM00249 | PHD_3 | 696 | 736 | 1.0E-5 | IPR001965 |
| SMART | SM00249 | PHD_3 | 782 | 839 | 0.0038 | IPR001965 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 886 | 1047 | 9.866186 | IPR000182 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 697 | 735 | - | IPR019786 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 783 | 838 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 15 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 354 | 379 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 353 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 224 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 399 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | NP_001336837.1 | uncharacterized protein LOC100274990 [Zea mays] | 0 |
| TrEMBL | A0A5J9SK28 | N-acetyltransferase domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_55330 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology