Basic Information
Locus ID:
Chr11G024080
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000011 | 52314908 | 52320313 | + | Chr11G024080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 151 | 216 | 5.8E-9 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 143 | 215 | 2.58E-11 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 145 | 222 | 7.2E-14 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 150 | 230 | 0.0066 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 149 | 215 | 9.626806 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 53 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.2 | nucleotide binding;nucleic acid binding. | 0 |
| RefSeq | XP_025813539.1 | nuclear speckle RNA-binding protein A-like [Panicum hallii] | 0 |
| Q6JB11 | Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A811SED4 | RRM domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS65208 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology