Basic Information
Locus ID:
Chr11G024010
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000011 | 52274134 | 52277405 | - | Chr11G024010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 82 | 177 | 2.6E-18 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 193 | 220 | 4.1E-4 | IPR002110 |
| Pfam | PF00023 | Ankyrin repeat | 46 | 75 | 1.1E-6 | IPR002110 |
| SUPERFAMILY | SSF57850 | RING/U-box | 298 | 358 | 6.48E-9 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 16 | 245 | 2.84E-48 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 11 | 82 | 5.4E-15 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 289 | 373 | 3.1E-9 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 83 | 245 | 2.7E-39 | IPR036770 |
| SMART | SM00248 | ANK_2a | 192 | 221 | 7.9E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 3.0E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.18 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 142 | 0.28 | IPR002110 |
| SMART | SM00248 | ANK_2a | 148 | 177 | 1.0E-5 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 192 | 224 | 11.94154 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 148 | 180 | 11.70115 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.469215 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 8.65621 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 148 | 175 | 10.948734 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 8.640504 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.372149 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 77 | 109 | 9.27054 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 304 | 353 | 10.158304 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 192 | 218 | 11.346704 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 319 | 328 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 397 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 371 | 394 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_039806234.1 | probable E3 ubiquitin-protein ligase XBOS36 [Panicum virgatum] | 0 |
| Q4JHE0 | Probable E3 ubiquitin-protein ligase XBOS36 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS36 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9TPX7 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_46564 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology