Basic Information
Locus ID:
Chr11G022660
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000011 | 51139606 | 51140169 | + | Chr11G022660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16474 | RING-H2_RNF111_like | 131 | 173 | 4.00392E-19 | - |
| Pfam | PF13639 | Ring finger domain | 130 | 173 | 2.6E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 130 | 178 | 5.96E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 98 | 179 | 4.8E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 131 | 172 | 9.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 131 | 173 | 12.459772 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66070.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025813272.1 | RING-H2 finger protein ATL66-like [Panicum hallii] | 0 |
| Q9FKX5 | NEP1-interacting protein-like 1 OS=Arabidopsis thaliana OX=3702 GN=ATL27 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2T7E2U2 | RING-type E3 ubiquitin transferase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G333600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.296, BH06.405, CH06.402 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0509460, gene-QOZ80_6BG0461560 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_013958 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g06150.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G047100 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G022660 |
| Poaceae | Zea mays | 1 | Zm00001eb376620_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34749 |