Basic Information
Locus ID:
Chr11G022250
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000011 | 50720605 | 50724940 | + | Chr11G022250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 671 | 712 | 4.59229E-26 | - |
| Pfam | PF00069 | Protein kinase domain | 411 | 667 | 1.6E-38 | IPR000719 |
| Pfam | PF04564 | U-box domain | 668 | 737 | 6.5E-20 | IPR003613 |
| Pfam | PF13181 | Tetratricopeptide repeat | 198 | 230 | 0.11 | IPR019734 |
| SUPERFAMILY | SSF48452 | TPR-like | 128 | 241 | 9.93E-33 | IPR011990 |
| SUPERFAMILY | SSF57850 | RING/U-box | 666 | 739 | 2.74E-26 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 385 | 635 | 2.97E-65 | IPR011009 |
| SUPERFAMILY | SSF48452 | TPR-like | 8 | 98 | 1.3E-24 | IPR011990 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 481 | 649 | 9.2E-40 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 666 | 740 | 6.0E-31 | IPR013083 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 386 | 480 | 4.7E-29 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 7 | 106 | 1.3E-20 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 119 | 253 | 2.9E-29 | IPR011990 |
| SMART | SM00028 | tpr_5 | 163 | 196 | 14.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 197 | 230 | 0.014 | IPR019734 |
| SMART | SM00504 | Ubox_2 | 670 | 733 | 7.6E-33 | IPR003613 |
| SMART | SM00028 | tpr_5 | 129 | 162 | 3.4E-4 | IPR019734 |
| SMART | SM00028 | tpr_5 | 44 | 77 | 0.0023 | IPR019734 |
| SMART | SM00220 | serkin_6 | 408 | 641 | 4.7E-30 | IPR000719 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 129 | 162 | 9.2339 | IPR019734 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 408 | 671 | 31.2411 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 666 | 740 | 40.948513 | IPR003613 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 414 | 435 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 509 | 521 | - | IPR008271 |
| Coils | Coil | Coil | 304 | 335 | - | - |
| Coils | Coil | Coil | 360 | 380 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_002437884.1 | U-box domain-containing protein 57 [Sorghum bicolor] | 0 |
| Q5WA76 | U-box domain-containing protein 70 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB70 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9TM73 | RING-type E3 ubiquitin transferase OS=Eragrostis curvula OX=38414 GN=EJB05_46066 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.358, BH06.474, CH06.471 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0510180, gene-QOZ80_6AG0512070 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0654940.1, HORVU.MOREX.r3.7HG0655040.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_028463, gene-QYE76_028467 |
| Poaceae | Oryza coarctata | 2 | Oco11G002860, Oco12G002920 |
| Poaceae | Oryza sativa | 4 | LOC_Os06g06450.1, LOC_Os06g06470.1, LOC_Os06g06490.1 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G053600 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0100581, Pt_Chr0401511, Pt_Chr0401540, Pt_Chr0402087 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G022250 |
| Poaceae | Thinopyrum elongatum | 5 | Tel6E01G117100, Tel6E01G538000, Tel7E01G244100 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC7AG014340, gene_TRIDC7AG014380 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G122200.2, TraesCS7A02G122600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb257390_P002, Zm00001eb375820_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34785 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31406 |