Basic Information
Locus ID:
Chr11G018690
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000011 | 46229104 | 46230585 | - | Chr11G018690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 46 | 87 | 2.76121E-22 | - |
| Pfam | PF04564 | U-box domain | 42 | 112 | 1.1E-18 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 35 | 112 | 3.36E-28 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 223 | 435 | 2.75E-12 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 118 | 7.9E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 194 | 436 | 2.1E-13 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 45 | 108 | 3.8E-31 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 41 | 115 | 36.684883 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_025812044.1 | U-box domain-containing protein 21-like [Panicum hallii] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2T7E170 | RING-type E3 ubiquitin transferase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G287600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology