Basic Information
Locus ID:
Chr11G018260
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000011 | 45065860 | 45071217 | - | Chr11G018260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 160 | 209 | 2.21777E-30 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 6.17486E-20 | - |
| Pfam | PF00627 | UBA/TS-N domain | 166 | 204 | 1.9E-14 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.4E-15 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 282 | 337 | 1.6E-19 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 363 | 399 | 6.2E-8 | IPR015940 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 88 | 2.53E-19 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 162 | 219 | 2.11E-12 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 278 | 341 | 2.49E-19 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 346 | 406 | 3.69E-12 | IPR009060 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 3.5E-23 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 271 | 338 | 9.5E-25 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 356 | 403 | 3.8E-21 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 159 | 209 | 3.8E-21 | - |
| SMART | SM00165 | uba_6 | 166 | 206 | 9.7E-6 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.0E-17 | IPR000626 |
| SMART | SM00727 | CBM | 280 | 323 | 3.9E-6 | IPR006636 |
| SMART | SM00165 | uba_6 | 364 | 401 | 6.0E-8 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 407 | 1.3E-108 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 362 | 402 | 13.342098 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.671614 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 164 | 207 | 13.028836 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 358 | 374 | 2.0E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 390 | 405 | 2.0E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 308 | 330 | 2.0E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 375 | 389 | 2.0E-31 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 250 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_025813528.1 | ubiquitin receptor RAD23d-like [Panicum hallii] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9TJY4 | Ubiquitin receptor RAD23 OS=Eragrostis curvula OX=38414 GN=EJB05_45328 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology