HalophFGD

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Basic Information
Locus ID: Chr11G015650
Species & Taxonomic ID: Sporobolus alterniflorus & 29706
Genome Assembly: GWHCBIM00000000
Description: source UniProtKB
Maps and Mapping Data
Chromosome Start End Strand ID
GWHCBIM00000011 33501544 33502512 + Chr11G015650
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
0.00 0.00 Da 0.00 0.00 0.00
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
CDD cd09272 RNase_HI_RT_Ty1 129 262 7.27988E-72 -
Pfam PF07727 Reverse transcriptase (RNA-dependent DNA polymerase) 2 81 5.6E-16 IPR013103
SUPERFAMILY SSF56672 DNA/RNA polymerases 2 231 1.78E-15 IPR043502
Best hit
Source Best Hit ID Description E-value
RefSeq XP_021305441.1 uncharacterized protein LOC110431073 [Sorghum bicolor] 0
Swiss-Prot Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1 0
TrEMBL B8AMT3 Reverse transcriptase Ty1/copia-type domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_14210 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Anacardiaceae Pistacia vera 1 pistato.v30198590
Poaceae Lolium multiflorum 1 gene-QYE76_025322
Poaceae Oryza coarctata 1 Oco01G017510
Poaceae Sporobolus alterniflorus 10 Chr01G000210, Chr05G011570, Chr05G013330, Chr0G006590 ...
Chr11G015650, Chr11G017340, Chr20G005380, Chr23G019380, Chr24G006800, Chr25G007100
Solanaceae Lycium barbarum 1 gene-LOC132628466
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.