Basic Information
Locus ID:
Chr11G014880
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
RNA splicing
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000011 | 26702229 | 26703537 | + | Chr11G014880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08540.1 | 0 | |
| RefSeq | XP_004976305.1 | uncharacterized protein LOC101780748 [Setaria italica] | 0 |
| TrEMBL | A0A3L6QB01 | Genome assembly, chromosome: II OS=Panicum miliaceum OX=4540 GN=C2845_PM15G15220 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg5075 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25337 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah038639 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g202280 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14662, Sbi_jg55424 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25986 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012469 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl21324, Sgl26657, Sgl78025, Sgl80529 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015047, gene:ENSEOMG00000037654 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0000110, CQ.Regalona.r1.9BG0021990 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30212920 |
| Apiaceae | Apium graveolens | 1 | Ag5G01875 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G012850 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714791 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.3495.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G17918, Ftri3G08865 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G08540.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10013959m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g34350.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB02g052640.2N, BniB08g003880.2N, BniB08g003890.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1990 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2138 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g02550 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0335s00011.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g23350 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.1575 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025306 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30461 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.1659, BH09.1848, CH09.1978 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0309840, gene-QOZ80_4BG0341010 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0183450.1 |
| Poaceae | Oryza coarctata | 2 | Oco07G011180, Oco08G010910 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g44560.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G166600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0301992, Pt_Chr0302016 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr02G010200, Chr11G014880, Chr23G008250, Chr25G006800 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G646000, Tel3E01G646500, Tel5E01G679400 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC2AG054240, gene_TRIDC2BG056940 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G374600.1, TraesCS2B02G391600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb076700_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-37135, nbis-gene-5337 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g20090, Zma_g21661 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.2336, evm.TU.LG23.569 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g03950 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_17_RagTag.999 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23724 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11076 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21882 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000013l.559 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004477 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10955 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23071 |
| Salicaceae | Populus euphratica | 1 | populus_peu19803 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622323 |
| Solanaceae | Solanum chilense | 1 | SOLCI000046200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011770 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_948 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1389 |
| Zosteraceae | Zostera marina | 1 | Zosma05g23960.v3.1 |