Basic Information
Locus ID:
Chr11G013770
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000011 | 18598366 | 18602095 | + | Chr11G013770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 614 | 654 | 3.49183E-18 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 612 | 659 | 3.6E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 614 | 660 | 1.67E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 595 | 666 | 8.0E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 615 | 654 | 10.18781 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 343 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | NP_001145411.1 | uncharacterized LOC100278771 isoform 1 [Zea mays] | 0 |
| TrEMBL | A0A5J9THB1 | RING-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_44171 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology