Basic Information
Locus ID:
Chr11G008410
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000011 | 7896354 | 7898126 | + | Chr11G008410 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 34 | 77 | 1.3E-4 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 271 | 580 | 5.49E-25 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 132 | 244 | 2.88E-13 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 24 | 85 | 3.14E-7 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 409 | 586 | 5.7E-22 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 32 | 69 | 1.8E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 89 | 382 | 2.6E-32 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 282 | 307 | 29.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 171 | 195 | 7.7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 222 | 247 | 190.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 558 | 583 | 100.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 309 | 334 | 35.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 196 | 221 | 10.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 531 | 556 | 0.76 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 145 | 170 | 0.83 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021310368.1 | EIN3-binding F-box protein 2-like [Sorghum bicolor] | 0 |
| TrEMBL | A0A5J9TFQ2 | F-box domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_43645 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.375.V1.1 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g10740 |
| Poaceae | Echinochloa crus-galli | 1 | BH03.2836 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0482630 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G013880, Chr10G013900, Chr10G013910, Chr11G008410 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG059180 |
| Poaceae | Zea mays | 2 | Zm00001eb241470_P001, Zm00001eb319400_P001 |