Basic Information
Locus ID:
Chr11G008180
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Polysaccharide lyase family 4, domain III
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000011 | 7621881 | 7625841 | + | Chr11G008180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10320 | RGL4_N | 118 | 399 | 8.40557E-67 | - |
| CDD | cd10316 | RGL4_M | 439 | 538 | 4.00268E-31 | IPR029413 |
| CDD | cd10317 | RGL4_C | 550 | 732 | 1.26822E-51 | - |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 548 | 731 | 1.3E-50 | IPR029411 |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 463 | 533 | 4.7E-22 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 112 | 306 | 2.8E-69 | IPR010325 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 112 | 401 | 3.77E-6 | IPR011013 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 545 | 732 | 2.55E-37 | IPR008979 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 440 | 536 | 1.31E-8 | IPR013784 |
| Gene3D | G3DSA:2.60.120.260 | - | 545 | 732 | 3.2E-16 | - |
| Gene3D | G3DSA:2.60.40.1120 | - | 436 | 535 | 1.9E-6 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 109 | 386 | 5.0E-12 | IPR014718 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09890.4 | - | 0 |
| RefSeq | XP_004977458.1 | uncharacterized protein LOC101768622 isoform X1 [Setaria italica] | 0 |
| TrEMBL | A0A5J9UTE0 | rhamnogalacturonan endolyase OS=Eragrostis curvula OX=38414 GN=EJB05_29692 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology