Basic Information
Locus ID:
Chr11G006120
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Suppressor of mec-8 and unc-52 protein homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000011 | 5531270 | 5533330 | + | Chr11G006120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 8 | 109 | 1.3E-11 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73720.1 | transducin family protein / WD-40 repeat family protein. Encodes SMU1, a protein involved in RNA splicing. | 0 |
| RefSeq | NP_001167711.1 | Suppressor of mec-8 and unc-52 protein homolog 1-like [Zea mays] | 0 |
| Q8W117 | Suppressor of mec-8 and unc-52 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SMU1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9UBP4 | WD40 repeat-containing protein SMU1 OS=Eragrostis curvula OX=38414 GN=EJB05_30732 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 2 | Ah013714, Ah029388 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.2341s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g24170 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-9582 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.903 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00018796 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0404751, Pt_Chr0506121 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr0G000570, Chr11G006120 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G720900 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5BG070380 |
| Poaceae | Triticum aestivum | 2 | TraesCS1A02G213200.1.cds1, TraesCS3A02G125000.1.cds1 |