Basic Information
Locus ID:
Chr11G006030
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000011 | 5384073 | 5391013 | + | Chr11G006030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 51 | 206 | 2.34998E-28 | - |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 358 | 418 | 8.1E-12 | IPR007010 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 12 | 356 | 2.8E-109 | IPR007012 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 85 | 155 | 9.2E-8 | IPR002934 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 207 | 356 | 4.71E-66 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 8 | 204 | 1.96E-50 | IPR043519 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 357 | 484 | 8.24E-38 | IPR011068 |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 358 | 474 | 2.2E-27 | - |
| Gene3D | G3DSA:1.10.1410.10 | - | 12 | 354 | 3.3E-153 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 44 | 200 | 3.3E-153 | IPR043519 |
| PIRSF | PIRSF018425 | PolyA_polymerase | 2 | 611 | 6.8E-220 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 604 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 515 | 532 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 496 | 514 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 485 | 604 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_025810846.1 | nuclear poly(A) polymerase 4-like isoform X2 [Panicum hallii] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6PD44 | polynucleotide adenylyltransferase OS=Panicum miliaceum OX=4540 GN=C2845_PM10G14520 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology