Basic Information
Locus ID:
Chr11G005220
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000011 | 4390916 | 4398422 | - | Chr11G005220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08958 | FR_SDR_e | 57 | 311 | 3.84542E-106 | - |
| Pfam | PF01073 | 3-beta hydroxysteroid dehydrogenase/isomerase family | 106 | 250 | 2.7E-10 | IPR002225 |
| Pfam | PF04053 | Coatomer WD associated region | 401 | 845 | 2.5E-164 | IPR006692 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 57 | 325 | 8.01E-40 | IPR036291 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 347 | 574 | 6.96E-12 | IPR036322 |
| Gene3D | G3DSA:3.40.50.720 | - | 54 | 347 | 1.2E-87 | - |
| Gene3D | G3DSA:1.25.40.470 | - | 672 | 880 | 5.8E-83 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 948 | 962 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 930 | 984 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79990.1 | structural molecules. | 0 |
| RefSeq | XP_012701031.1 | coatomer subunit beta'-2 isoform X1 [Setaria italica] | 0 |
| Q6H8D5 | Coatomer subunit beta'-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0209100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A368QX51 | Coatomer subunit beta' OS=Setaria italica OX=4555 GN=SETIT_4G227600v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology