Basic Information
Locus ID:
Chr11G003270
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000011 | 2602463 | 2608286 | + | Chr11G003270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 183 | 489 | 1.05659E-159 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 184 | 488 | 7.6E-42 | IPR001394 |
| Pfam | PF01753 | MYND finger | 85 | 122 | 7.9E-10 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 83 | 126 | 3.14E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 181 | 500 | 8.44E-86 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 179 | 497 | 6.1E-90 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 73 | 129 | 1.3E-12 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 184 | 491 | 49.072754 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 85 | 122 | 12.233541 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 185 | 200 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 85 | 122 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 992 | 1014 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 986 | 1014 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 0 |
| RefSeq | XP_034589899.1 | ubiquitin carboxyl-terminal hydrolase 19-like [Setaria viridis] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 0 | |
| TrEMBL | A0A5J9TBL9 | MYND-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_41792 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology