Basic Information
Locus ID:
Chr11G001120
Species & Taxonomic ID:
Sporobolus alterniflorus & 29706
Genome Assembly:
GWHCBIM00000000
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| GWHCBIM00000011 | 632681 | 635976 | + | Chr11G001120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 0.00 | 0.00 Da | 0.00 | 0.00 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17939 | DEADc_EIF4A | 114 | 312 | 3.97234E-137 | - |
| CDD | cd18787 | SF2_C_DEAD | 323 | 453 | 2.63556E-61 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 336 | 444 | 1.2E-28 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 135 | 296 | 2.8E-39 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 179 | 464 | 2.93E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 319 | 483 | 5.1E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 100 | 318 | 1.2E-66 | IPR027417 |
| SMART | SM00490 | helicmild6 | 363 | 444 | 1.5E-31 | IPR001650 |
| SMART | SM00487 | ultradead3 | 129 | 326 | 5.5E-57 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 322 | 483 | 25.880337 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 110 | 138 | 10.920789 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 141 | 311 | 29.459307 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 257 | 265 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 59 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_025811222.1 | eukaryotic initiation factor 4A-3 [Panicum hallii] | 0 |
| Q6Z2Z4 | Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0146600 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1W0VUR3 | Eukaryotic initiation factor 4A-11 OS=Sorghum bicolor OX=4558 GN=SORBI_3010G251100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology